Editorial: Special issue on regime shifts and tipping points in ecology
Dakos, V. & Hastings, A. (2013)
Theoretical Ecology 6 (3):253-254 [full text]

Flickering as an early warning signal
Dakos, V., van Nes, E.H. & Scheffer, M. (2013)
Theoretical Ecology 6 (3):309-317 [full text]

Rapid succession of plant associations on the small ocean island of Mauritius at the onset of the Holocene
De Boer, E.J., Hooghiemstra, H., Vincent Florens, F.B., Baider, C., Engels, S., Dakos, V., Blaauw, M. & Bennett, K.D. (2013)
Quaternary Science Reviews 68:114-125 [full text]

Was Lates Late? A Null Model for the Nile Perch Boom in Lake Victoria
Downing, A.S., Galic, N., Goudswaard, K.P.C., van Nes, E.H., Scheffer, M., Witte, F. & Mooij, W.M. (2013)
PLoS ONE 8 (10):art. no. e76847 [full text]

Assembling the pieces of Lake Victoria’s many food webs: Reply to Kolding
Downing, A.S., Van Nes, E.H., Janse, J.H., Witte, F., Cornelissen, I.J.M., Scheffer, M. & Mooij, W.M. (2013)
Ecological Applications 23 (3):671-675 [full text]

Effects of resources and mortality on the growth and reproduction of Nile perch in Lake Victoria
Downing, A.S., van Nes, E.H., van de Wolfshaar, K.E., Scheffer, M. & Mooij, W.M. (2013)
Freshwater Biology 58 (4):828-840 [full text]

Effects of interannual climate variability on tropical tree cover
Holmgren, M., Hirota, M., Van Nes, E.H. & Scheffer, M. (2013)
Nature Climate Change 3 (8):755-758 [full text]

Multiscale regime shifts and planetary boundaries
Hughes, T.P., Carpenter, S., Rockström, J., Scheffer, M. & Walker, B. (2013)
Trends in Ecology and Evolution 28 (7):389-395 [full text]

Living dangerously on borrowed time during slow, unrecognized regime shifts
Hughes, T.P., Linares, C., Dakos, V., van de Leemput, I.A. & van Nes, E.H. (2013)
Trends in Ecology and Evolution 28 (3):149-155 [full text]

Early warning signals also precede non-catastrophic transitions
Kéfi, S., Dakos, V., Scheffer, M., Van Nes, E.H. & Rietkerk, M. (2013)
Oikos 122 (5):641-648 [full text]

The role of subtropical zooplankton as grazers of phytoplankton under different predation levels
Lacerot, G., Kruk, C., Lürling, M. & Scheffer, M. (2013)
Freshwater Biology 58 (3):494-503 [full text]

Bimodality in stable isotope composition facilitates the tracing of carbon transfer from macrophytes to higher trophic levels
Mendonça, R., Kosten, S., Lacerot, G., Mazzeo, N., Roland, F., Ometto, J.P., Paz, E.A., Bove, C.P., Bueno, N.C., Gomes, J.H.C. & Scheffer, M. (2013)
Hydrobiologia 710 (1):205-218 [full text]

Changing weather conditions and floating plants in temperate drainage ditches
Peeters, E.T.H.M., van Zuidam, J.P., van Zuidam, B.G., Van Nes, E.H., Kosten, S., Heuts, P.G.M., Roijackers, R.M.M., Netten, J.J.C. & Scheffer, M. (2013)
Journal of Applied Ecology 50 (3):585-593 [full text]

Estimating the tolerance of species to the effects of global environmental change
Saavedra, S., Rohr, R.P., Dakos, V. & Bascompte, J. (2013)
Nature Communications 4 [full text]

Migraine Strikes as Neuronal Excitability Reaches a Tipping Point
Scheffer, M., van den Berg, A. & Ferrari, M.D. (2013)
PLoS ONE 8 (8):art. no. e72514 [full text]

Repeated parallel evolution reveals limiting similarity in subterranean diving beetles
Vergnon, R., Leijs, R., van Nes, E.H. & Scheffer, M. (2013)
American Naturalist 182 (1):67-75 [full text]

Interpretation and predictions of the emergent neutrality model: A reply to Barabás et al
Vergnon, R., van Nes, E.H. & Scheffer, M. (2013)
Oikos 122 (11):1573-1575 [full text]

Wang et al. reply
Wang, R., Dearing, J.A., Langdon, P.G., Zhang, E., Yang, X., Dakos, V. & Scheffer, M. (2013)
Nature 498 (7455):E12-E13 [full text]

General resilience to cope with extreme events
Carpenter, S.R., Arrow, K.J., Barrett, S., Biggs, R., Brock, W.A., Crépin, A.S., Engström, G., Folke, C., Hughes, T.P., Kautsky, N., Li, C.Z., McCarney, G., Meng, K., Mäler, K.G., Polasky, S., Scheffer, M., Shogren, J., Sterner, T., Vincent, J.R., Walker, B., Xepapadeas, A. & de Zeeuw, A. (2012)
Sustainability 4 (12):3248-3259 [full text]

Methods for detecting early warnings of critical transitions in time series illustrated using simulated ecological data
Dakos, V., Carpenter, S.R., Brock, W.A., Ellison, A.M., Guttal, V., Ives, A.R., Kéfi, S., Livina, V., Seekell, D.A., van Nes, E.H. & Scheffer, M. (2012)
PLoS ONE 7 (7):e41010 [full text]

Robustness of variance and autocorrelation as indicators of critical slowing down
Dakos, V., Van Nes, E.H., D’Odorico, P. & Scheffer, M. (2012)
Ecology 93 (2):264-271 [full text]

Collapse and reorganization of a food web of Mwanza Gulf, Lake Victoria
Downing, A.S., Van Nes, E.H., Janse, J.H., Witte, F., Cornelissen, I.J.M., Scheffer, M. & Mooij, W.M. (2012)
Ecological Applications 22 (1):229-239 [full text]

The resilience and resistance of an ecosystem to a collapse of diversity
Downing, A.S., van Nes, E.H., Mooij, W.M. & Scheffer, M. (2012)
PLoS ONE 7 (9):e46135 [full text]

Does predator interference cause alternative stable states in multispecies communities?
Feng, J., Dakos, V. & van Nes, E.H. (2012)
Theoretical Population Biology 82 (3):170-176 [full text]

Detecting dynamical changes in nonlinear time series using locally linear state-space models
Ives, A.R. & Dakos, V. (2012)
Ecosphere 3 (6):art58 [full text]

Warmer climates boost cyanobacterial dominance in shallow lakes
Kosten, S., Huszar, V.L.M., Bécares, E., Costa, L.S., van Donk, E., Hansson, L.A., Jeppesen, E., Kruk, C., Lacerot, G., Mazzeo, N., De Meester, L., Moss, B., Lürling, M., Nõges, T., Romo, S. & Scheffer, M. (2012)
Global Change Biology 18 (1):118-126 [full text]

Bimodal transparency as an indicator for alternative states in South American lakes
Kosten, S., Vernooij, M., Van Nes, E.H., Sagrario, M.Á.G., Clevers, J.G.P.W. & Scheffer, M. (2012)
Freshwater Biology 57 (6):1191-1201 [full text]

Evolution of blind beetles in isolated aquifers: A test of alternative modes of speciation
Leijs, R., van Nes, E.H., Watts, C.H., Cooper, S.J.B., Humphreys, W.F. & Hogendoorn, K. (2012)
PLoS ONE 7 (3):e34260 [full text]

Climate bifurcation during the last deglaciation?
Lenton, T.M., Livina, V.N., Dakos, V. & Scheffer, M. (2012)
Climate of the Past 8 (4):1127-1139 [full text]

Early warning of climate tipping points from critical slowing down: Comparing methods to improve robustness
Lenton, T.M., Livina, V.N., Dakos, V., Van Nes, E.H. & Scheffer, M. (2012)
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 370 (1962):1185-1204 [full text]

Early detection of ecosystem regime shifts: A multiple method evaluation for management application
Lindegren, M., Dakos, V., Gröger, J.P., Gårdmark, A., Kornilovs, G., Otto, S.A. & Möllmann, C. (2012)
PLoS ONE 7 (7)[full text]

Lower biodiversity of native fish but only marginally altered plankton biomass in tropical lakes hosting introduced piscivorous Cichla cf. ocellaris
Menezes, R.F., Attayde, J.L., Lacerot, G., Kosten, S., Coimbra e Souza, L., Costa, L.S., van Nes, E.H. & Jeppesen, E. (2012)
Biological Invasions 14 (7):1353-1363 [full text]

Anticipating critical transitions
Scheffer, M., Carpenter, S.R., Lenton, T.M., Bascompte, J., Brock, W., Dakos, V., van de Koppel, J., van de Leemput, I.A., Levin, S.A., van Nes, E.H., Pascual, M. & Vandermeer, J. (2012)
Science 338 (6105):344-348 [full text]

Thresholds for boreal biome transitions
Scheffer, M., Hirota, M., Holmgren, M., Van Nes, E.H. & Chapin, F.S. (2012)
Proceedings of the National Academy of Sciences 109 (52):21384–21389 [full text]

Ecosystem engineering by seagrasses interacts with grazing to shape an intertidal landscape
van der Heide, T., Eklöf, J.S., van Nes, E.H., van der Zee, E.M., Donadi, S., Weerman, E.J., Olff, H. & Eriksson, B.K. (2012)
PLoS ONE 7 (8):e42060 [full text]

Response to comment on “Global resilience of tropical forest and Savanna to critical transitions”
Van Nes, E.H., Holmgren, M., Hirota, M. & Scheffer, M. (2012)
Science 336 (6081):541 [full text]

Recovery rates reflect distance to a tipping point in a living system
Veraart, A.J., Faassen, E.J., Dakos, V., van Nes, E.H., Lürling, M. & Scheffer, M. (2012)
Nature 481 (7381):357-359 [full text]

Emergent neutrality leads to multimodal species abundance distributions
Vergnon, R., Van Nes, E.H. & Scheffer, M. (2012)
Nature Communications 3:663 [full text]

Flickering gives early warning signals of a critical transition to a eutrophic lake state
Wang, R., Dearing, J.A., Langdon, P.G., Zhang, E., Yang, X., Dakos, V. & Scheffer, M. (2012)
Nature 492 (7429):419-422 [full text]

Resonance of plankton communities with temperature fluctuations
Benincá, E., Dakos, V., Van Nes, E.H., Huisman, J. & Scheffer, M. (2011)
American Naturalist 178 (4):E85-E95 [full text]

Are we entering an era of concatenated global crises?
Biggs, D., Biggs, R., Dakos, V., Scholes, R.J. & Schoon, M. (2011)
Ecology and Society 16 (2)[full text]

Slowing down in spatially patterned ecosystems at the brink of collapse
Dakos, V., Kéfi, S., Rietkerk, M., van Nes, E.H. & Scheffer, M. (2011)
American Naturalist 177 (6):E153-E166 [full text]

Trophic downgrading of planet earth
Estes, J.A., Terborgh, J., Brashares, J.S., Power, M.E., Berger, J., Bond, W.J., Carpenter, S.R., Essington, T.E., Holt, R.D., Jackson, J.B.C., Marquis, R.J., Oksanen, L., Oksanen, T., Paine, R.T., Pikitch, E.K., Ripple, W.J., Sandin, S.A., Scheffer, M., Schoener, T.W., Shurin, J.B., Sinclair, A.R.E., Soulé, M.E., Virtanen, R. & Wardle, D.A. (2011)
Science 333 (6040):301-306 [full text]

Potential effects of climate change and eutrophication on a large subtropical shallow lake
Fragoso, C.R., Motta Marques, D.M.L., Ferreira, T.F., Janse, J.H. & Van Nes, E.H. (2011)
Environmental Modelling And Software 26 (11):1337-1348 [full text]

Abrupt regime shifts in space and time along rivers and connected lake systems
Hilt, S., Köhler, J., Kozerski, H.P., van Nes, E.H. & Scheffer, M. (2011)
Oikos 120 (5):766-775 [full text]

Global resilience of tropical forest and savanna to critical transitions
Hirota, M., Holmgren, M., Van Nes, E.H. & Scheffer, M. (2011)
Science 334 (6053):232-235 [full text]

Ambiguous climate impacts on competition between submerged macrophytes and phytoplankton in shallow lakes
Kosten, S., Jeppesen, E., Huszar, V.L., Mazzeo, N., Van Nes, E.H., Peeters, E.T. & Scheffer, M. (2011)
Freshwater Biology 56 (8):1540-1553 [full text]

Phytoplankton community composition can be predicted best in terms of morphological groups
Kruk, C., Peeters, E.T.H.M., Van Nes, E.H., Huszar, V.L.M., Costa, L.S. & Scheffer, M. (2011)
Limnology and Oceanography 56 (1):110-118 [full text]

Allied attack: climate change and eutrophication
Moss, B., Kosten, S., Meerhoff, M., Battarbee, R.W., Jeppesen, E., Mazzeo, N., Havens, K., Lacerot, G., Liu, Z.W., De Meester, L., Paerl, H. & Scheffer, M. (2011)
Inland Waters 1 (2):101-105 [full text]

Local ecosystem feedbacks and critical transitions in the climate
Rietkerk, M., Brovkin, V., van Bodegom, P.M., Claussen, M., Dekker, S.C., Dijkstra, H.A., Goryachkin, S.V., Kabat, P., van Nes, E.H., Neutel, A.M., Nicholson, S.E., Nobre, C., Petoukhov, V., Provenzale, A., Scheffer, M. & Seneviratne, S.I. (2011)
Ecological Complexity 8 (3):223-228 [full text]

Soil microbes drive the classic plant diversity-productivity pattern
Schnitzer, S.A., Klironomos, J.N., HilleRisLambers, J., Kinkel, L.L., Reich, P.B., Xiao, K., Rillig, M.C., Sikes, B.A., Callaway, R.M., Mangan, S.A., Van Nes, E.H. & Scheffer, M. (2011)
Ecology 92 (2):296-303 [full text]

The anthropocene: From global change to planetary stewardship
Steffen, W., Persson, Å., Deutsch, L., Zalasiewicz, J., Williams, M., Richardson, K., Crumley, C., Crutzen, P., Folke, C., Gordon, L., Molina, M., Ramanathan, V., Rockström, J., Scheffer, M., Schellnhuber, H.J. & Svedin, U. (2011)
Ambio 40 (7):739-761 [full text]

Creation of a Gilded Trap by the High Economic Value of the Maine Lobster Fishery
Steneck, R.S., Hughes, T.P., Cinner, J.E., Adger, W.N., Arnold, S.N., Berkes, F., Boudreau, S.A., Brown, K., Folke, C., Gunderson, L., Olsson, P., Scheffer, M., Stephenson, E., Walker, B., Wilson, J. & Worm, B. (2011)
Conservation Biology 25 (5):904-912 [full text]

Predicting microbial nitrogen pathways from basic principles
Van de Leemput, I.A., Veraart, A.J., Dakos, V., De Klein, J.J.M., Strous, M. & Scheffer, M. (2011)
Environmental Microbiology 13 (6):1477-1487 [full text]

Positive feedbacks in seagrass ecosystems – Evidence from large-scale empirical data
van der Heide, T., van Nes, E.H., van Katwijk, M.M., Olff, H. & Smolders, A.J.P. (2011)
PLoS ONE 6 (1):e16504 [full text]

Effects of aquatic vegetation type on denitrification
Veraart, A.J., de Bruijne, W.J.J., de Klein, J.J.M., Peeters, E.T.H.M. & Scheffer, M. (2011)
Biogeochemistry 104 (1-3):267-274 [full text]

Warming can boost denitrification disproportionately due to altered oxygen dynamics
Veraart, A.J., de Klein, J.J.M. & Scheffer, M. (2011)
PLoS ONE 6 (3)[full text]

Omnivory by planktivores stabilizes plankton dynamics, but may either promote or reduce algal biomass
Attayde, J.L., van Nes, E.H., Araujo, A.I.L., Corso, G. & Scheffer, M. (2010)
Ecosystems 13 (3):410-420 [full text]

Spatial correlation as leading indicator of catastrophic shifts
Dakos, V., van Nes, E.H., Donangelo, R., Fort, H. & Scheffer, M. (2010)
Theoretical Ecology 3 (3):163-174 [full text]

Early warnings for catastrophic shifts in ecosystems: Comparison between spatial and temporal indicators
Donangelo, R., Fort, H., Dakos, V., Scheffer, M. & Van Nes, E.H. (2010)
International Journal of Bifurcation and Chaos 20 (2):315-321 [full text]

Resilience thinking: Integrating resilience, adaptability and transformability
Folke, C., Carpenter, S.R., Walker, B., Scheffer, M., Chapin, T. & Rockström, J. (2010)
Ecology and Society 15 (4):20 [full text]

Catastrophic shifts in ecosystems: Spatial early warnings and management procedures (Inspired in the physics of phase transitions)
Fort, H., Mazzeo, N., Scheffer, M. & Van Nes, E. (2010)
Journal of Physics: Conference Series 246:012035 [full text]

The clumping transition in niche competition: A robust critical phenomenon
Fort, H., Scheffer, M. & Van Nes, E.H. (2010)
Journal of Statistical Mechanics: Theory and Experiment 2010 (5):P05005 [full text]

Navigating transformations in governance of Chilean marine coastal resources
Gelcich, S., Hughes, T.P., Olsson, P., Folke, C., Defeo, O., Fernández, M., Foale, S., Gunderson, L.H., Rodríguez-Sickert, C., Scheffer, M., Steneck, R.S. & Castilla, J.C. (2010)
Proceedings of the National Academy of Sciences of the United States of America 107 (39):16794-16799 [full text]

Strong facilitation in mild environments: The stress gradient hypothesis revisited
Holmgren, M. & Scheffer, M. (2010)
Journal of Ecology 98 (6):1269-1275 [full text]

Estimating the critical phosphorus loading of shallow lakes with the ecosystem model PCLake: Sensitivity, calibration and uncertainty
Janse, J.H., Scheffer, M., Lijklema, L., Van Liere, L., Sloot, J.S. & Mooij, W.M. (2010)
Ecological Modelling 221 (4):654-665 [full text]

Climate-dependent CO2 emissions from lakes
Kosten, S., Roland, F., Da Motta Marques, D.M.L., Van Nes, E.H., Mazzeo, N., Sternberg, L.D.S.L., Scheffer, M. & Cole, J.J. (2010)
Global Biogeochemical Cycles 24 (2)[full text]

A morphological classification capturing functional variation in phytoplankton
Kruk, C., Huszar, V.L.M., Peeters, E.T.H.M., Bonilla, S., Costa, L., Lürling, M., Reynolds, C.S. & Scheffer, M. (2010)
Freshwater Biology 55 (3):614-627 [full text]

Challenges and opportunities for integrating lake ecosystem modelling approaches
Mooij, W.M., Trolle, D., Jeppesen, E., Arhonditsis, G., Belolipetsky, P.V., Chitamwebwa, D.B.R., Degermendzhy, A.G., DeAngelis, D.L., De Senerpont Domis, L.N., Downing, A.S., Elliott, J.A., Fragoso Jr, C.R., Gaedke, U., Genova, S.N., Gulati, R.D., Häkanson, L., Hamilton, D.P., Hipsey, M.R., ‘t Hoen, J., Hülsmann, S., Los, F.H., Makler-Pick, V., Petzoldt, T., Prokopkin, I.G., Rinke, K., Schep, S.A., Tominaga, K., Van Dam, A.A., Van Nes, E.H., Wells, S.A. & Janse, J.H. (2010)
Aquatic Ecology 44:633–667 [full text]

Effect of temperature and nutrients on the competition between free-floating Salvinia natans and submerged Elodea nuttallii in mesocosms
Netten, J.J.C., Arts, G.H.P., Gylstra, R., Van Nes, E.H., Scheffer, M. & Roijackers, R.M.M. (2010)
Fundamental and Applied Limnology 177 (2):125-132 [full text]

Complex systems: Foreseeing tipping points
Scheffer, M. (2010)
Nature 467 (7314):411-412 [full text]

Strong growth limitation of a floating plant (Lemna gibba) by the submerged macrophyte (Elodea nuttallii) under laboratory conditions
Szabo, S., Scheffer, M., Roijackers, R., Waluto, B., Braun, M., Nagy, P.T., Borics, G. & Zambrano, L. (2010)
Freshwater Biology 55 (3):681-690 [full text]

Spatial self-organized patterning in seagrasses along a depth gradient of an intertidal ecosystem
Van Der Heide, T., Bouma, T.J., Van Nes, E.H., Van De Koppel, J., Scheffer, M., Roelofs, J.G.M., Van Katwijk, M.M. & Smolders, A.J.P. (2010)
Ecology 91 (2):362-369 [full text]

Alternative stable states driven by density-dependent toxicity
van der Heide, T., van Nes, E.H., van Katwijk, M.M., Scheffer, M., Hendriks, A.J. & Smolders, A.J.P. (2010)
Ecosystems 13 (6):841-850 [full text]

Transdisciplinary EU science institute needs funds urgently
Vasbinder, J.W., Andersson, B., Arthur, W.B., Boasson, M., De Boer, R., Changeux, J.P., Domingo, E., Eigen, M., Fersht, A., Frenkel, D., Rees, M., Groen, T., Huber, R., Hunt, T., Holland, J., May, R., Norrby, E., Nijkamp, P., Lehn, J.M., Rabbinge, R., Scheffer, M., Schuster, P., Serageldin, I., Stuip, J., De Vries, J., Van Vierssen, W. & Willems, R. (2010)
Nature 463 (7283):876 [full text]

From scientific speculation to effective adaptive management: A case study of the role of social marketing in promoting novel restoration strategies for degraded dry lands
Westley, F., Holmgren, M. & Scheffer, M. (2010)
Ecology and Society 15 (3)[full text]

The angiosperm radiation revisited, an ecological explanation for Darwin’s ‘abominable mystery’
Berendse, F. & Scheffer, M. (2009)
Ecology Letters 12 (9):865-872 [full text]

Resilience: Accounting for the noncomputable
Carpenter, S.R., Folke, C., Scheffer, M. & Westley, F. (2009)
Ecology and Society 14 (1)[full text]

Interannual variability in species composition explained as seasonally entrained chaos
Dakos, V., Benincá, E., Van Nes, E.H., Philippart, C.J.M., Scheffer, M. & Huisman, J. (2009)
Proceedings of the Royal Society B: Biological Sciences 276 (1669):2871-2880 [full text]

Continuous growth of the giant grass Zizaniopsis bonariensis in subtropical wetlands
Ferreira, T.F., Van Nes, E.H. & Marques, D.M. (2009)
Freshwater Biology 54 (2):321-330 [full text]

The paradox of the clumps mathematically explained
Fort, H., Scheffer, M. & van Nes, E.H. (2009)
Theoretical Ecology 2 (3):171-176 [full text]

IPH-TRIM3D-PCLake: A three-dimensional complex dynamic model for subtropical aquatic ecosystems
Fragoso Jr, C.R., van Nes, E.H., Janse, J.H. & da Motta Marques, D. (2009)
Environmental Modelling And Software 24 (11):1347-1348 [full text]

Data-directed modelling of Daphnia dynamics in a long-term micro-ecosystem experiment
Grasman, J., van Nes, E.H. & Kersting, K. (2009)
Ecological Modelling 220 (3):343-350 [full text]

Lake and watershed characteristics rather than climate influence nutrient limitation in shallow lakes
Kosten, S., Huszar, V.L.M., Mazzeo, N., Scheffer, M., Sternberg, L.D.S.L. & Jeppesen, E. (2009)
Ecological Applications 19 (7):1791-1804 [full text]

Climate-related differences in the dominance of submerged macrophytes in shallow lakes
Kosten, S., Kamarainen, A., Jeppesen, E., Van Nes, E.H., Peeters, E.T.H.M., Mazzeo, N., Sass, L., Hauxwell, J., Hansel-welch, N., Lauridsen, T.L., Søndergaard, M., Bachmann, R.W., Lacerot, G. & Scheffer, M. (2009)
Global Change Biology 15 (10):2503-2517 [full text]

Effects of submerged vegetation on water clarity across climates
Kosten, S., Lacerot, G., Jeppesen, E., Da Motta Marques, D., Van Nes, E.H., Mazzeo, N. & Scheffer, M. (2009)
Ecosystems 12 (7):1117-1129 [full text]

Hydrology-driven regime shifts in a shallow tropical lake
Loverde-Oliveira, S.M., Huszar, V.L.M., Mazzeo, N. & Scheffer, M. (2009)
Ecosystems 12 (5):807-819 [full text]

Local ecosystem feedbacks and critical transitions in the climate
Rietkerk, M., Brovkin, V., Van Bodegom, P.M., Claussen, M., Dekker, S.C., Dijkstra, H.A., Goryachkin, S.V., Kabat, P., Van Nes, E.H., Neutel, A.M., Nicholson, S.E., Nobre, C., Petoukhov, V., Provenzale, A., Scheffer, M. & Seneviratne, S.I. (2009)
Biogeosciences Discussions 6 (5):10121-10136 [full text]

A safe operating space for humanity
Rockström, J., Steffen, W., Noone, K., Persson, Ã., Chapin, F.S., Lambin, E.F., Lenton, T.M., Scheffer, M., Folke, C., Schellnhuber, H.J., Nykvist, B., De Wit, C.A., Hughes, T., Van Der Leeuw, S., Rodhe, H., Sörlin, S., Snyder, P.K., Costanza, R., Svedin, U., Falkenmark, M., Karlberg, L., Corell, R.W., Fabry, V.J., Hansen, J., Walker, B., Liverman, D., Richardson, K., Crutzen, P. & Foley, J.A. (2009)
Nature 461 (7263):472-475 [full text]

Planetary boundaries: Exploring the safe operating space for humanity
Rockström, J., Steffen, W., Noone, K., Persson, A., Chapin Iii, F.S., Lambin, E., Lenton, T.M., Scheffer, M., Folke, C., Schellnhuber, H.J., Nykvist, B., de Wit, C.A., Hughes, T., van der Leeuw, S., Rodhe, H., Sörlin, S., Snyder, P.K., Costanza, R., Svedin, U., Falkenmark, M., Karlberg, L., Corell, R.W., Fabry, V.J., Hansen, J., Walker, B., Liverman, D., Richardson, K., Crutzen, P. & Foley, J. (2009)
Ecology and Society 14 (2)[full text]

Early-warning signals for critical transitions
Scheffer, M., Bascompte, J., Brock, W.A., Brovkin, V., Carpenter, S.R., Dakos, V., Held, H., van Nes, E.H., Rietkerk, M. & Sugihara, G. (2009)
Nature 461 (7260):53-59 [full text]

Chaos in a long-term experiment with a plankton community
Benincà, E., Huisman, J., Heerkloss, R., Jöhnk, K.D., Branco, P., van Nes, E.H., Scheffer, M. & Ellner, S.P. (2008)
Nature 451 (7180):823-826 [full text]

Assessing the ecological integrity of a major transboundary mediterranean river based on environmental habitat variables and benthic macroinvertebrates (Aoos-Vjose River, Greece-Albania)
Chatzinikolaou, Y., Dakos, V. & Lazaridou, M. (2008)
International Review of Hydrobiology 93 (1):73-87 [full text]

Slowing down as an early warning signal for abrupt climate change
Dakos, V., Scheffer, M., van Nes, E.H., Brovkin, V., Petoukhov, V. & Held, H. (2008)
Proceedings of the National Academy of Sciences of the United States of America 105 (38):14308–14312 [full text]

Regime shifts in marine ecosystems: detection, prediction and management
deYoung, B., Barange, M., Beaugrand, G., Harris, R., Perry, R.I., Scheffer, M. & Werner, F. (2008)
Trends in Ecology and Evolution 23 (7):402-409 [full text]

Modelling spatial heterogeneity of phytoplankton in Lake Mangueira, a large shallow subtropical lake in South Brazil
Fragoso Jr, C.R., Marques, D.M.L.M., Collischonn, W., Tucci, C.E.M. & van Nes, E.H. (2008)
Ecological Modelling 219 (1-2):125-137 [full text]

A new release of INSIM: A temperature-dependent model for insect development
Hemerik, L. & Van Nes, E.H. (2008)
Proceedings of the Netherlands Entomological Society Meeting 19:147-155 [full text]

Critical phosphorus loading of different types of shallow lakes and the consequences for management estimated with the ecosystem model PCLake
Janse, J.H., De Senerpont Domis, L.N., Scheffer, M., Lijklema, L., Van Liere, L., Klinge, M. & Mooij, W.M. (2008)
Limnologica 38 (3-4):203-219 [full text]

Microscale vegetation-soil feedback boosts hysteresis in a regional vegetation-climate system
Janssen, R.H.H., Meinders, M.B.J., Van Nes, E.H. & Scheffer, M. (2008)
Global Change Biology 14 (5):1104-1112 [full text]

Use of open-top chambers to study the effect of climate change in aquatic ecosystems
Netten, J.J.C., Van Nes, E.H., Scheffer, M. & Roijackers, R.M.M. (2008)
Limnology and Oceanography: Methods 6 (JUN):223-229 [full text]

Fast response of lake plankton and nutrients to river inundations on floodplain lakes
Roozen, F.C.J.M., Peeters, E.T.H.M., Roijackers, R., Wyngaert, I.V.D., Wolters, H., De Coninck, H., Ibelings, B.W., Buijse, A.D. & Scheffer, M. (2008)
River Research and Applications 24 (4):388-406 [full text]

Pulse-driven loss of top-down control: The critical-rate hypothesis
Scheffer, M., Van Nes, E.H., Holmgren, M. & Hughes, T. (2008)
Ecosystems 11 (2):226-237 [full text]

Toxicity of reduced nitrogen in eelgrass (Zostera marina) is highly dependent on shoot density and pH
Van der Heide, T., Smolders, A.J.P., Rijkens, B.G.A., Van Nes, E.H., Van Katwijk, M.M. & Roelofs, J.G.M. (2008)
Oecologia 158 (3):411-419 [full text]

Modelling the effects of diving ducks on zebra mussels Dreissena polymorpha in lakes
Van Nes, E.H., Noordhuis, R., Lammens, E.H.H.R., Portielje, R., Reeze, B. & Peeters, E.T.H.M. (2008)
Ecological Modelling 211 (3-4):481-490 [full text]

The consequences of changes in abundance of Callianassa subterranea and Amphiura filiformis on sediment erosion at the Frisian Front (south-eastern North Sea)
Amaro, T.P.F., Duineveld, G.C.A., Bergman, M.J.N., Witbaard, R. & Scheffer, M. (2007)
Hydrobiologia 589 (1):273-285 [full text]

Can overwintering versus diapausing strategy in Daphnia determine match-mismatch events in zooplankton-algae interactions?
De Senerpont Domis, L.N., Mooij, W.M., Hulsmann, S., van Nes, E.H. & Scheffer, M. (2007)
Oecologia 150 (4):682-698 [full text]

Adaptive management of the great barrier reef and the Grand Canyon world heritage areas
Hughes, T.P., Gunderson, L.H., Folke, C., Baird, A.H., Bellwood, D., Berkes, F., Crona, B., Helfgott, A., Leslie, H., Norberg, J., Nystrom, M., Olsson, P., Osterblom, H., Scheffer, M., Schuttenberg, H., Steneck, R.S., Tengoe, M., Troll, M., Walker, B., Wilson, J. & Worm, B. (2007)
Ambio 36 (7):586-592 [full text]

Info-disruption: pollution and the transfer of chemical information between organisms
Lürling, M. & Scheffer, M. (2007)
Trends in Ecology & Evolution 22 (7):374-379 [full text]

Habitat-mediated cannibalism and microhabitat restriction in the stream invertebrate Gammarus pulex
McGrath, K.E., Peeters, E., Beijer, J.A.J. & Scheffer, M. (2007)
Hydrobiologia 589:155-164 [full text]

Macrophyte-phytoplankton interactions: The relative importance of allelopathy versus other factors
Mulderij, G., Van Nes, E.H. & Van Donk, E. (2007)
Ecological Modelling 204 (1-2):85-92 [full text]

Resuspension of algal cells by benthivorous fish boosts phytoplankton biomass and alters community structure in shallow lakes
Roozen, F.C.J.M., Lürling, M., Vlek, H., Kraan, E.A.V.P., Ibelings, B.W. & Scheffer, M. (2007)
Freshwater Biology 52 (6):977-987 [full text]

Regime shifts in shallow lakes
Scheffer, M. & Jeppesen, E. (2007)
Ecosystems 10 (1):1-3 [full text]

Shallow lakes theory revisited: various alternative regimes driven by climate, nutrients, depth and lake size
Scheffer, M. & van Nes, E.H. (2007)
Hydrobiologia 584:455-466 [full text]

The evolutionary basis of rigidity: locks in cells, minds, and society
Scheffer, M. & Westley, F.R. (2007)
Ecology and Society 12 (2):36 [full text]

Lake restoration in Denmark and The Netherlands: successes, failures and long-term effects
Søndergaard, M., Jeppesen, E., Lauridsen, T.L., Skov, C., Van Nes, E.H., Roijackers, R.M.M., Lammens, E.H.R.R. & Portielje, R. (2007)
Journal of Applied Ecology 44 (6):1095-1105 [full text]

Positive feedbacks in seagrass ecosystems: implications for success in conservation and restoration
Van der Heide, T., van Nes, E.H., Geerling, G.W., Smolders, A.J.P., Bouma, T.J. & Van Katwijk, M.M. (2007)
Ecosystems 10 (8):1311-1322 [full text]

Long transients near the ghost of a stable state in eutrophic shallow lakes with fluctuating water levels
Van Geest, G.J., Coops, H., Scheffer, M. & van Nes, E.H. (2007)
Ecosystems 10 (1):37-47 [full text]

Reduced top–down control of phytoplankton in warmer climates can be explained by continuous fish reproduction
Van Leeuwen, E., Lacerot, G., Van Nes, E.H., Hemerik, L. & Scheffer, M. (2007)
Ecological Modelling doi:10.1016/j.ecolmodel.2007.03.039 [full text]

Possible mechanisms for a marine benthic regime shift in the North Sea
Van Nes, E.H., Amaro, T., Scheffer, M. & Duineveld, G.C.A. (2007)
Marine Ecology Progress Series 330:39–47 [full text]

A theory for cyclic shifts between alternative states in shallow lakes
Van Nes, E.H., Rip, W.J. & Scheffer, M. (2007)
Ecosystems 10 (1):17-27 [full text]

Slow recovery from perturbations as a generic indicator of a nearby catastrophic shift
Van Nes, E.H. & Scheffer, M. (2007)
American Naturalist 169 (6):738–747 [full text]

Ecology – Globalization, roving bandits, and marine resources
Berkes, F., Hughes, T.P., Steneck, R.S., Wilson, J.A., Bellwood, D.R., Crona, B., Folke, C., Gunderson, L.H., Leslie, H.M., Norberg, J., Nystrom, M., Olsson, P., Osterblom, H., Scheffer, M. & Worm, B. (2006)
Science 311 (5767):1557-1558 [full text]

Longitudinal impacts of anthropogenic pressures on benthic macroinvertebrate assemblages in a large transboundary Mediterranean river during the low flow period
Chatzinikolaou, Y., Dakos, V. & Lazaridou, M. (2006)
Acta Hydrochimica et Hydrobiologica 34 (5):453-463 [full text]

Effects of interstitial refugia and current velocity on growth of the amphipod Gammarus pulex Linnaeus
Franken, R.J.M., Batten, S., Beijer, J.A.J., Gardeniers, J.J.P., Scheffer, M. & Peeters, E.T.H.M. (2006)
Journal of the North American Benthological Society 25 (3):656-663 [full text]

Keeping bandits at bay? Response
Hughes, T.P., Berkes, F., Steneck, R.S., Wilson, J.A., Bellwood, D.R., Crona, B., Folke, C., Gunderson, L.H., Leslie, H.M., Norberg, J., Nystrom, M., Olsson, P., Osterblom, H., Scheffer, M. & Worm, B. (2006)
Science 313 (5787):614-614 [full text]

Importance of nutrient competition and allelopathic effects in suppression of the green alga Scenedesmus obliquus by the macrophytes Chara, Elodea and Myriophyllum
Lürling, M., van Geest, G. & Scheffer, M. (2006)
Hydrobiologia 556:209-220 [full text]

Effects of crushed conspecifics on growth and survival of Penaeus monodon Fabricius post larvae
Nga, B.T., Lürling, M., Peeters, E., Roijackers, R., Scheffer, M. & Nghia, T.T. (2006)
Aquaculture Research 37 (3):224-232 [full text]

Effects of decomposing Rhizophora apiculata leaves on larvae of the shrimp Penaeus monodon
Nga, B.T., Roijackers, R., Nghia, T.T., Ut, V.N. & Scheffer, M. (2006)
Aquaculture International 14 (5):467-477 [full text]

Positive feedback between global warming and atmospheric CO2 concentration inferred from past climate change
Scheffer, M., Brovkin, V. & Cox, P.M. (2006)
Geophysical Research Letters 33 (doi:10.1029/2005GL025044):L10702 [full text]

Small habitat size and isolation can promote species richness: second-order effects on biodiversity in shallow lakes and ponds
Scheffer, M., van Geest, G.J., Zimmer, K., Jeppesen, E., Sondergaard, M., Butler, M.G., Hanson, M.A., Declerck, S. & De Meester, L. (2006)
Oikos 112 (1):227-231 [full text]

Self-organized similarity, the evolutionary emergence of groups of similar species
Scheffer, M. & Van Nes, E.H. (2006)
Proceedings of the National Academy of Science of the United States of America 103 (16):6230-6235 [full text]

Impacts of agricultural phosphorus use in catchments on shallow lake water quality: about buffers, time delays and equilibria
Schippers, P., van de Weerd, H., de Klein, J., de Jong, B. & Scheffer, M. (2006)
Science of the Total Environment 369 (1-3):280-294 [full text]

Experiments with duckweed-moth systems suggest that global warming may reduce rather than promote herbivory
Van der Heide, T., Roijackers, R.M.M., Peeters, E.T.H.M. & Van Nes, E.H. (2006)
Freshwater Biology 51 (1):110-116 [full text]

Simple equation for describing the temperature dependent growth of free-floating macrophytes
Van der Heide, T., Roijackers, R.M.M., van Nes, E.H. & Peeters, E. (2006)
Aquatic Botany 84 (2):171-175 [full text]

Modelling the clonal growth of the rhizomatous macrophyte Potamogeton perfoliatus
Wolfer, S.R., Van Nes, E.H. & Straile, D. (2006)
Ecological Modelling 192 (1-2):67-82 [full text]

Growth limitation of Lemna minor due to high plant density
Driever, S.M., Van Nes, E.H. & Roijackers, R.M.M. (2005)
Aquatic Botany 81 (3):245-251 [full text]

Growth of shredders on leaf litter biofilms: the effect of light intensity
Franken, R.J.M., Waluto, B., Peeters, E., Gardeniers, J.J.P., Beijer, J.A.J. & Scheffer, M. (2005)
Freshwater Biology 50 (3):459-466 [full text]

Chemical and physical effects of crowding on growth and survival of Penaeus monodon Fabricius post-larvae
Nga, B.T., Lurling, M., Peeters, E., Roijackers, R., Scheffer, M. & Nghia, T.T. (2005)
Aquaculture 246 (1-4):455-465 [full text]

Young mangrove stands produce a large and high quality litter input to aquatic systems
Nga, B.T., Tinh, H.Q., Tam, D.T., Scheffer, M. & Roijackers, R. (2005)
Wetlands Ecology and Management 13 (5):569-576 [full text]

Oscillation of a shallow lake ecosystem upon reduction in external phosphorus load
Rip, W.J., Ouboter, M., Beltman, B. & Van Nes, E.H. (2005)
Archiv fur Hydrobiologie 164 (3):387-409 [full text]

Cascading effects of overfishing marine systems
Scheffer, M., Carpenter, S.R. & De Young, B. (2005)
Trends in Ecology & Evolution 20 (11):579-581 [full text]

Synergy between small- and large-scale feedbacks of vegetation on the water cycle
Scheffer, M., Holmgren, M., Brovkin, V. & Claussen, M. (2005)
Global Change Biology 11 (7):1003-1012 [full text]

The strength of limiting factors for duckweed during algal competition
Szabo, S., Roijackers, R., Scheffer, M. & Borics, G. (2005)
Archiv Fur Hydrobiologie 164 (1):127-140 [full text]

Succession of aquatic vegetation driven by reduced water-level fluctuations in floodplain lakes
Van Geest, G.J., Coops, H., Roijackers, R.M.M., Buijse, A.D. & Scheffer, M. (2005)
Journal of Applied Ecology 42 (2):251-260 [full text]

Water-level fluctuations affect macrophyte richness in floodplain lakes
Van Geest, G.J., Wolters, H., Roozen, F., Coops, H., Roijackers, R.M.M., Buijse, A.D. & Scheffer, M. (2005)
Hydrobiologia 539:239-248 [full text]

Implications of spatial heterogeneity for regime shifts in ecosystems
Van Nes, E.H. & Scheffer, M. (2005)
Ecology 86 (7):1797–1807 [full text]

A strategy to improve the contribution of complex simulation models to ecological theory
Van Nes, E.H. & Scheffer, M. (2005)
Ecological Modelling 185 (2-4):153-164 [full text]

A method for measuring effects of bioturbation and consolidation on erosion resistance of aquatic sediments
Zambrano, L., Beijer, J., Roozen, F. & Scheffer, M. (2005)
Archiv Fur Hydrobiologie 162 (3):327-337 [full text]

Managed water levels and the expansion of emergent vegetation along a lakeshore
Coops, H., Vulink, J.T. & van Nes, E.H. (2004)
Limnologica 34 (1-2):57-64 [full text]

Regime shifts, resilience, and biodiversity in ecosystem management
Folke, C., Carpenter, S., Walker, B., Scheffer, M., Elmqvist, T., Gunderson, L. & Holling, C.S. (2004)
Annual Review of Ecology Evolution and Systematics 35:557-581 [full text]

Overexploitation of renewable resources by ancient societies and the role of sunk-cost effects
Janssen, M.A. & Scheffer, M. (2004)
Ecology and Society 9 (1):http://www.ecologyandsociety.org/vol9/iss1/art6 [full text]

Effects of commercial fishery on the bream population and the expansion of Chara aspera in Lake Veluwe
Lammens, E.H.R.R., Meijer, M.L., Van Nes, E.H. & Van den Berg, M.S. (2004)
Ecological Modelling 177 (3-4):233-244 [full text]

Assessment of the water and habitat quality of a Mediterranean river (Kalamas, Epirus, Hellas), in accordance with the EU water framework directive
Lekka, E., Kagalou, I., Lazaridou-Dimitriadou, M., Albanis, T., Dakos, V., Lambropoulou, D. & Sakkas, V. (2004)
Acta Hydrochimica et Hydrobiologica 32 (3):175-188 [full text]

Experimental analysis of the competition between algae and duckweed
Roijackers, R., Szabo, S. & Scheffer, M. (2004)
Archiv Fur Hydrobiologie 160 (3):401-412 [full text]

Mechanisms for marine regime shifts: Can we use lakes as microcosms for oceans?
Scheffer, M. & van Nes, E.H. (2004)
Progress In Oceanography 60 (2-4):303-319 [full text]

Increase of atmospheric CO2 promotes phytoplankton productivity
Schippers, P., Lurling, M. & Scheffer, M. (2004)
Ecology Letters 7 (6):446-451 [full text]

Large species shifts triggered by small forces
Van Nes, E.H. & Scheffer, M. (2004)
American Naturalist 164 (2):255-266 [full text]

What minimal models cannot tell: a comment on “A model of phytoplankton blooms” (Huppert et al., 2002)
Van Nes, E.H. & Scheffer, M. (2004)
American Naturalist 163 (6):924-926 [full text]

Impacts of multiple stressors on biodiversity and ecosystem functioning: the role of species co-tolerance
Vinebrooke, R.D., Cottingham, K.L., Norberg, J., Scheffer, M., Dodson, S.I., Maberly, S.C. & Sommer, U. (2004)
Oikos 104 (3):451-457 [full text]

The distribution of chydorids (Branchiopoda, Anomopoda) in European shallow lakes and its application to ecological quality monitoring
De Eyto, E., Irvine, K., García-Criado, F., Gyllström, M., Jeppensen, E., Kornijow, R., Miracle, M.R., Nykänen, M., Bareiss, C., Cerbin, S., Salujõe, J., Franken, R., Stephens, D., Moss, B., Bécares, E., Fernández-Aláez, C., Hansson, L.A., Romo, S., Boronat, L., Vicente, E., Kairesalo, T., Gross, E., Van Den Bund, W., Van Donk, E., Virro, T., Nõges, T., Nõges, P., Peeters, E. & Scheffer, M. (2003)
Archiv fur Hydrobiologie 156 (2):181-202 [full text]

Regime shifts in the Sahara and Sahel: Interactions between ecological and climatic systems in Northern Africa
Foley, J.A., Coe, M.T., Scheffer, M. & Wang, G. (2003)
Ecosystems 6 (6):524-539 [full text]

Sunk-cost effects and vulnerability to collapse in ancient societies
Janssen, M.A., Kohler, T.A. & Scheffer, M. (2003)
Current Anthropology 44 (5):722-728 [full text]

The determination of ecological status in shallow lakes – a tested system (ECOFRAME) for implementation of the European Water Framework Directive
Moss, B., Stephen, D., Alvarez, C., Becares, E., Van de Bund, W., Collings, S.E., Van Donk, E., De Eyto, E., Feldmann, T., Fernandez-Alaez, C., Fernandez-Alaez, M., Franken, R.J.M., Garcia-Criado, F., Gross, E.M., Gyllstrom, M., Hansson, L.A., Irvine, K., Jarvalt, A., Jensen, J.P., Jeppesen, E., Kairesalo, T., Kornijow, R., Krause, T., Kunnap, H., Laas, A., Lille, E., Lorens, B., Luup, H., Miracle, M.R., Noges, P., Noges, T., Nykanen, M., Ott, I., Peczula, W., Peeters, E., Phillips, G., Romo, S., Russell, V., Salujoe, J., Scheffer, M., Siewertsen, K., Smal, H., Tesch, C., Timm, H., Tuvikene, L., Tonno, I., Virro, T., Vicente, E. & Wilson, D. (2003)
Aquatic Conservation-Marine and Freshwater Ecosystems 13 (6):507-549 [full text]

Lake age and water level affect the turbidity of floodplain lakes along the lower Rhine
Roozen, F.C.J.M., Van Geest, G.J., Ibelings, B.W., Roijackers, R., Scheffer, M. & Buijse, A.D. (2003)
Freshwater Biology 48 (3):519-531 [full text]

Catastrophic regime shifts in ecosystems: linking theory to observation
Scheffer, M. & Carpenter, S.R. (2003)
Trends in Ecology & Evolution 18 (12):648-656 [full text]

Fish facilitate wave erosion
Scheffer, M., Portielje, R. & Zambrano, L. (2003)
Limnology and Oceanography 48:1920-1926 [full text]

Why plankton communities have no equilibrium: solutions to the paradox
Scheffer, M., Rinaldi, S., Huisman, J. & Weissing, F.J. (2003)
Hydrobiologia 491 (1):9-19 [full text]

Climatic effects on regime shifts in lakes: A reply
Scheffer, M., Straile, D., Van Nes, E.H. & Hosper, H. (2003)
Limnology and Oceanography 48 (3):1353-1356 [full text]

Floating plant dominance as a stable state
Scheffer, M., Szabo, S., Gragnani, A., van Nes, E.H., Rinaldi, S., Kautsky, N., Norberg, J., Roijackers, R.M.M. & Franken, R.J.M. (2003)
Proceedings of the National Academy of Science of the United States of America 100 (7):4040-4045 [full text]

Slow response of societies to new problems: Causes and costs
Scheffer, M., Westley, F. & Brock, W. (2003)
Ecosystems 6 (5):493-502 [full text]

A simple method for analysing the effects of algae on the growth of Lemna and preventing algal growth in duckweed bioassays
Szabo, S., Roijackers, R. & Scheffer, M. (2003)
Archiv für Hydrobiologie 157 (4):567-575 [full text]

Vegetation abundance in lowland flood plan lakes determined by surface area, age and connectivity
Van Geest, G.J., Roozen, F., Coops, H., Roijackers, R.M.M., Buijse, A.D., Peeters, E. & Scheffer, M. (2003)
Freshwater Biology 48 (3):440-454 [full text]

Alternative attractors may boost uncertainty and sensitivity in ecological models
Van Nes, E.H. & Scheffer, M. (2003)
Ecological Modelling 159 (2-3):117-124 [full text]

Charisma: a spatial explicit simulation model of submerged macrophytes
Van Nes, E.H., Scheffer, M., Van den Berg, M.S. & Coops, H. (2003)
Ecological Modelling 159 (2-3):103-116 [full text]

Promoting low-canopy macrophytes to compromise conservation and recreational navigation in a shallow lake
Coops, H., Van Nes, E.H., Van den Berg, M.S. & Butijn, G.D. (2002)
Aquatic Ecology 36 (4):483-492 [full text]

Differences in the exploitation of bream in three shallow lake systems and their relation to water quality
Lammens, E.H.R.R., Van Nes, E.H. & Mooij, W.M. (2002)
Freshwater Biology 47 (12):2435-2442 [full text]

PERPEST model, a case-based reasoning approach to Predict the Ecological Risks of PESTicides
Van den Brink, P.J., Roelsma, J., Van Nes, E.H., Scheffer, M. & Brock, T.C.M. (2002)
Environmental Toxicology and Chemistry 21 (11):2500-2506 [full text]

PISCATOR, an individual-based model to analyze the dynamics of lake fish communities
Van Nes, E.H., Lammens, E.H.R.R. & Scheffer, M. (2002)
Ecological Modelling 152 (2-3):261-278 [full text]

Aquatic macrophytes: restore, eradicate or is there a compromise?
Van Nes, E.H., Scheffer, M., Van den Berg, M.S. & Coops, H. (2002)
Aquatic Botany 72 (3-4):387-403 [full text]

Dominance of charophytes in eutrophic shallow lakes–when should we expect it to be an alternative stable state?
Van Nes, E.H., Scheffer, M., Van den Berg, M.S. & Coops, H. (2002)
Aquatic Botany 72 (3-4):275-296 [full text]

Fish reduces stability of lake sediments
Zambrano, L., Beijer, J.A.J. & Scheffer, M. (2002)
submitted [full text]

El Niño as a window of opportunity for the restoration of degraded arid ecosystems
Holmgren, M. & Scheffer, M. (2001)
Ecosystems 4 (2):151-159 [full text]

El Niño effects on the dynamics of terrestrial ecosystems
Holmgren, M., Scheffer, M., Ezcurra, E., Gutiérrez, J.R. & Mohren, G.M.J. (2001)
Trends in Ecology and Evolution 16 (2):89-94 [full text]

Catastrophic shifts in ecosystems
Scheffer, M., Carpenter, S.R., Foley, J.A., Folke, C. & Walker, B. (2001)
Nature 413:591-596 [full text]

Climatic warming causes regime shifts in lake food webs
Scheffer, M., Straile, D., Van Nes, E.H. & Hosper, H. (2001)
Limnology and Oceanography 46 (7):1780-1783 [full text]

Catastrophic response of lakes to benthivorous fish introduction
Zambrano, L., Scheffer, M. & Martinez, M. (2001)
Oikos 94 (2):344-350 [full text]

Design guidelines for restoration of water bodies in the Lower Rhine floodplains
Coops, H., Buijse, A.D., Ibelings, B.W., Van Geest, G.J., Roozen, F.C.J.M., Roijackers, R. & Scheffer, M. (2000)
Angewandte Landschaftsökologie H 37:133-139 [full text]

Geometric analysis of ecological models with slow and fast processes
Rinaldi, S. & Scheffer, M. (2000)
Ecosystems 3 (6):507-521 [full text]

Socioeconomic mechanisms preventing optimum use of ecosystem services: an interdisciplinary theoretical analysis
Scheffer, M., Brock, W. & Westley, F. (2000)
Ecosystems 3 (5):451-471 [full text]

Minimal models of top-down control of phytoplankton
Scheffer, M. & Rinaldi, S. (2000)
Freshwater Biology 45 (2):265-283 [full text]

Effects of fish on plankton dynamics: a theoretical analysis
Scheffer, M., Rinaldi, S. & Kuznetsov, Y.A. (2000)
Canadian Journal of Fisheries and Aquatic Sciences 57 (6):1208-1219 [full text]

Top-down control of cyanobacteria: A theoretical analysis
Gragnani, A., Scheffer, M. & Rinaldi, S. (1999)
American Naturalist 153 (1):59-72 [full text]

Biomanipulation in shallow lakes in The Netherlands: an evaluation of 18 case studies
Meijer, M.L., De Boois, I., Scheffer, M., Portielje, R. & Hosper, H. (1999)
Hydrobiologia 408/409:13-30 [full text]

The effect of aquatic vegetation on turbidity; how important are the filter feeders?
Scheffer, M. (1999)
Hydrobiologia 409:307-316 [full text]

Searching explanations of nature in the mirror world of math
Scheffer, M. (1999)
Conservation Ecology 3 (2):11 [full text]

Dynamics and stability of Chara sp and Potamogeton pectinatus in a shallow lake changing in eutrophication level
Van den Berg, M.S., Scheffer, M., Van Nes, E.H. & Coops, H. (1999)
Hydrobiologia 409:335-342 [full text]

A simple model for evaluating the costs and benefits of aquatic macrophytes
Van Nes, E.H., Van den Berg, M.S., Clayton, J.S., Coops, H., Scheffer, M. & Van Ierland, E. (1999)
Hydrobiologia 415:335-339 [full text]

The role of characean algae in the management of eutrophic shallow lakes
Van den Berg, M.S., Scheffer, M., Coops, H. & Simons, J. (1998)
Journal of Phycology 34 (5):750-756 [full text]

The interplay of facilitation and competition in plant communities
Holmgren, M., Scheffer, M. & Huston, M.A. (1997)
Ecology 78 (7):1966-1975 [full text]

On the implications of predator avoidance
Scheffer, M. (1997)
Aquatic Ecology 31:99-107 [full text]

On the dominance of filamentous cyanobacteria in shallow, turbid lakes
Scheffer, M., Rinaldi, S., Gragnani, A., Mur, L.R. & Van Nes, E.H. (1997)
Ecology 78 (1):272-282 [full text]

Seasonal dynamics of Daphnia and algae explained as a periodically forced predator-prey system.
Scheffer, M., Rinaldi, S., Kuznetsov, Y.A. & Van Nes, E.H. (1997)
Oikos 80:519-532 [full text]

Stunted growth and stepwise die-off in animal cohorts
Scheffer, M., Baveco, J.M., DeAngelis, D.L., Lammens, E.H.R.R. & Shuter, B. (1995)
American Naturalist 145:376-388 [full text]

Super-individuals a simple solution for modelling large populations on an individual basis.
Scheffer, M., Baveco, J.M., DeAngelis, D.L., Rose, K.A. & Van Nes, E.H. (1995)
Ecological Modelling 80:161-170 [full text]

Voorspellen in de ecologie
Scheffer, M. & Beets, J. (1995)
Landschap 12:55-67 [full text]

Implications of spatial heterogeneity for the paradox of enrichment
Scheffer, M. & De Boer, R.J. (1995)
Ecology 76 (7):2270-2277 [full text]

Colonization and succession of macroinvertebrates in recently freshened Lake Volkerak-Zoom (the Netherlands)
Frantzen, N.M., De Visser, J. & Van Nes, E.H. (1994)
Hydrobiologia 276:323-334 [full text]

Long-term responses to fish-stock reduction in small shallow lakes – Interpretation of five-year results of four biomanipulation cases in the Netherlands and Denmark
Meijer, M.L., Jeppesen, E., Van Donk, E., Moss, B., Scheffer, M., Lammens, E.H.R.R., Van Nes, E.H., Berkum, J.A., De Jong, G.J., Faafeng, B.A. & Jensen, J.P. (1994)
Hydrobiologia 276:457-466 [full text]

The consequences of a drastic fish stock reduction in the large and shallow Lake Wolderwijd, The Netherlands – Can we understand what happened?
Meijer, M.L., Van Nes, E.H., Lammens, E.H.R.R. & Gulati, R.D. (1994)
Hydrobiologia 276:31-42 [full text]

Ecological models and the pitfalls of causality
Scheffer, M. & Beets, J. (1994)
Hydrobiologia 276:115-124 [full text]

Vegetated areas with clear water in turbid shallow lakes
Scheffer, M., Van den Berg, M.S., Breukelaar, A.W., Breukers, C.P.M., Coops, H., Doef, R.W. & Meijer, M.L. (1994)
Aquatic Botany 49:193-196 [full text]

Modeling growth and survival in an age-0 fish cohort
DeAngelis, D.L., Shuter, B.J., Ridgway, M.S. & Scheffer, M. (1993)
Transactions of the American Fisheries Society 122 (5):927-941 [full text]

Seasonality and chaos in a plankton-fish model
Doveri, F., Scheffer, M., Rinaldi, S., Muratori, S. & Kuznetsov, Y.A. (1993)
Theoretical Population Biology 43:159-183 [full text]

Fish stock reduction as a restoration measure in the large Lake Wolderwijd, The Netherlands
Meijer, M.L., van Nes, E.H., Lammens, E.H.R.R., Gulati, G.D., Grimm, M.P., Backx, J.J., Hollebeek, P., Blaauw, E.M. & Breukelaar, A.W. (1993)
Verhandlungen Internationale Vereinigung Theoretisch Angewandte Limnologie 25 (1):615-616 [full text]

MEGAPLANT – A simulation model of the dynamics of submerged plants
Scheffer, M., Bakema, A.H. & Wortelboer, F.G. (1993)
Aquatic Botany 45 (4):341-356 [full text]

Alternative equilibria in shallow lakes
Scheffer, M., Hosper, S.H., Meijer, M.L., Moss, B. & Jeppesen, E. (1993)
Trends in Ecology and Evolution 8 (8):275-279 [full text]

Multivariate analysis of macrozoobenthos in Lake Volkerak-Zoommeer (the Netherlands): Changes in an estuary before and after closure.
Van Nes, E.H. & Smit, H. (1993)
Archiv fuer Hydrobiologie 127:185-203 [full text]

Estimating habitat isolation in landscape planning
Knaapen, J.P., Scheffer, M. & Harms, B. (1992)
Landscape and Urban Planning 23:1-16 [full text]

Distribution and dynamics of submerged vegetation in a chain of shallow eutrophic lakes
Scheffer, M., De Redelijkheid, M.R. & Noppert, F. (1992)
Aquatic Botany 42:199-216 [full text]

Fish and nutrients interplay determines algal biomass: A minimal model
Scheffer, M. (1991)
Oikos 62 (3):271-282 [full text]

On the predictability of aquatic vegetation in shallow lakes
Scheffer, M. (1991)
Memorie dell’Istituto Italiano di Idrobiologia 48:207-217 [full text]

Should we expect strange attractors behind plankton dynamics: And if so, should we bother?
Scheffer, M. (1991)
Journal of Plankton Research 13:1291-1306 [full text]

Watervogels in het Volkerakmeer-Zoommeer; ontwikkelingen in de eerste twee jaren na afsluiting (1987-89) – Waterbirds in a new freshwater lake in S.W.Netherlands; developments in the first two years after embankment (1987-89)
Van Nes, E.H. & Marteijn, E.C.L. (1991)
Limosa 64:155-164 [full text]

Multiplicity of stable states in freshwater systems
Scheffer, M. (1990)
Hydrobiologia 200/201:475-486 [full text]

Alternative stable states in eutrophic, shallow freshwater systems: a minimal model
Scheffer, M. (1989)
Hydrobiological bulletin 23:73-83 [full text]

Oevers in beweging. Ontwikkelingen in de oeverzone van het Volkerakmeer-Zoommeer en de betekenis voor het integraal waterbeheer
Smit, H. & Van Nes, E.H. (1989)
H2O 22:656-661 [full text]

Actief biologisch beheer; dweilen met de kraan open?
Scheffer, M. (1988)
H2O 13:349-355 [full text]

An automated method for estimating the number of bird territories from an observation map
Scheffer, M. (1987)
Ardea 75:231-236 [full text]

Stadsvogels en stedelijk groen
Scheffer, M. (1986)
Groen 12:13-17 [full text]

Distribution of macro-invertebrates in a ditch in relation to the vegetation
Scheffer, M., Achterberg, A.A. & Beltman, B. (1984)
Freshwater Biology 14:367-370 [full text]